References

Abarenkov, Kessy, R Henrik Nilsson, Karl-Henrik Larsson, Andy F S Taylor, Tom W May, Tobias Guldberg Frøslev, Julia Pawlowska, et al. 2024. “The UNITE Database for Molecular Identification and Taxonomic Communication of Fungi and Other Eukaryotes: Sequences, Taxa and Classifications Reconsidered.” Nucleic Acids Research, 16.971, 52 (January): D791–97. https://doi.org/10.1093/nar/gkad1039.
Beule, Lukas, and Petr Karlovsky. 2020. “Improved Normalization of Species Count Data in Ecology by Scaling with Ranked Subsampling (SRS): Application to Microbial Communities.” PeerJ, 2.984, 8 (August): e9593. https://doi.org/10.7717/peerj.9593.
Cameron, Ellen S., Philip J. Schmidt, Benjamin J.-M. Tremblay, Monica B. Emelko, and Kirsten M. Müller. 2021. “Enhancing Diversity Analysis by Repeatedly Rarefying Next Generation Sequencing Data Describing Microbial Communities.” Scientific Reports, 4.379, 11 (1): 22302. https://doi.org/10.1038/s41598-021-01636-1.
Maslard, Corentin, Mustapha Arkoun, Fanny Leroy, Sylvie Girodet, Christophe Salon, and Marion Prudent. 2024. “Decoding the Double Stress Puzzle: Investigating Nutrient Uptake Efficiency and Root Architecture in Soybean Under Heat‐ and Water‐stresses.”
Maslard, Corentin, Mustapha Arkoun, Christophe Salon, and Marion Prudent. 2021. “Root Architecture Characterization in Relation to Biomass Allocation and Biological Nitrogen Fixation in a Collection of European Soybean Genotypes.” OCL 28: 48. https://doi.org/10.1051/ocl/2021033.
McKnight, Donald T., Roger Huerlimann, Deborah S. Bower, Lin Schwarzkopf, Ross A. Alford, and Kyall R. Zenger. 2019. “Methods for Normalizing Microbiome Data: An Ecological Perspective.” Edited by Simon Jarman. Methods in Ecology and Evolution, 7.781, 10 (3): 389–400. https://doi.org/10.1111/2041-210X.13115.
McMurdie, Paul J., and Susan Holmes. 2014. “Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible.” Edited by Alice Carolyn McHardy. PLoS Computational Biology, 4.475, 10 (4): e1003531. https://doi.org/10.1371/journal.pcbi.1003531.
Schloss, Patrick D. n.d. “Waste Not, Want Not: Revisiting the Analysis That Called into Question the Practice of Rarefaction.”
Weiss, Sophie, Zhenjiang Zech Xu, Shyamal Peddada, Amnon Amir, Kyle Bittinger, Antonio Gonzalez, Catherine Lozupone, et al. 2017. “Normalization and Microbial Differential Abundance Strategies Depend Upon Data Characteristics.” Microbiome, 14.65, 5 (1): 27. https://doi.org/10.1186/s40168-017-0237-y.